![]() STITCH – Protein-Chemical Interactions databaseĭatabase on expression response of cancer cells on bioactive drug-like moleculesĪcTOR – Chemical toxicity resources database PubChem – Public database for the bioactivity of small moleculesĬhEMBLdb – Database for chemical properties and biologialy active drug-like moleculesĭrugBank – Fact sheet on drugs (chemical, pharmacological, pharmaceutical) GeneFisher2 – Interactive PCR Primer Design Translate AA to DNA, Reverse Translate a protein Inverting DNA sequences, complements (useful for reverse primers)Īlign protein sequences (SIM – Alignment Tool for protein sequences) Ligation Calculator Gibson Mix or any type of Ligation CalculatorĬodon Harmonizer (Online Tool for Codon-Harmonization)Ĭhecking restriction sites at New England BiolabsĬhecking restriction sites (Non cutter und Unique cutters can be searched for) Tm Calculator Tm and Ta Calculator for Phusion polymerase RNAfold Analysis of Secondary structure of single strand DNA and RNA at desired temperature SnapGene Viewer Sequence view and editing (Free version) NEBasechanger Mutagenenesis primer design and PCR protocol NEB Goldengate Primer Design for Golden Gate assembly NEB Builder Primer Design for Gibson or HiFi assembly Online-Tools for biocatalysis including a tool to calculate Enantioselectivity and a tool to simulate kinetic and dynamic kinetic resolutions Molecular Biology & Biochemistry Protein Engineering Portal Tools for protein engineeringĮQuilibrator Calculation of deltaG for single reactions and metabolic pathways RetroBioCat A collection of tools for automated biocatalytic cascade design IBM RXN for Chemistry (AI-driven retrosynthesis and reaction outcome prediction)
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